Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium brassicacearum STM 196 (GCF_003010955.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Phyllobacterium brassicacearum STM 196, or try another query

tpiA CU102_RS08140 CU102_08145 WP_106710611.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_BARHE / Q8L1Z5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bartonella henselae
Q8L1Z5: triose-phosphate isomerase (EC 5.3.1.1) from Bartonella henselae

61% id,
100% cov

TPIS_DEIRA / Q9RUP5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Deinococcus radiodurans

47% id,
99% cov

TPIS_THET8 / Q5SJR1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermus thermophilus

44% id,
97% cov

More...

CU102_RS09220 CU102_09235 WP_106711044.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

49% id,
59% cov

CU102_RS19795 CU102_19790 WP_106712818.1: FMN-binding glutamate synthase family protein
is similar to:
PaperBLAST

TPIS_THETK / Q8NKN9: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermoproteus tenax
Q8NKN9: triose-phosphate isomerase (EC 5.3.1.1) from Thermoproteus tenax

26% id,
53% cov

Q97VM8: triose-phosphate isomerase (EC 5.3.1.1) from Saccharolobus solfataricus

37% id,
23% cov

CU102_RS06275 CU102_06285 WP_106710164.1: thiazole synthase
is similar to:
PaperBLAST

TPIS_THETK / Q8NKN9: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermoproteus tenax
Q8NKN9: triose-phosphate isomerase (EC 5.3.1.1) from Thermoproteus tenax

39% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory