Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium brassicacearum STM 196 (GCF_003010955.1)

Found 118 curated entries in PaperBLAST's database that match '6.3.1.2' as complete word(s).

These curated entries have 86 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Phyllobacterium brassicacearum STM 196, or try another query

glnT CU102_RS19800 CU102_19795 WP_106712819.1: type III glutamate--ammonia ligase
is similar to:
PaperBLAST

GLNA3_RHIME / O87393: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase III; GSIII; EC 6.3.1.2 from Rhizobium meliloti

87% id,
100% cov

Q0E5H7: glutamine synthetase (EC 6.3.1.2) from Halobacillus halophilus

36% id,
98% cov

P36687: glutamine synthetase (EC 6.3.1.2) from Pyrococcus woesei

34% id,
98% cov

More...

CU102_RS20080 CU102_20075 WP_106712973.1: glutamine synthetase beta-grasp domain-containing protein
is similar to:
PaperBLAST

GLNA2_RHILP / Q02154: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase II; GSII; EC 6.3.1.2 from Rhizobium leguminosarum

84% id,
100% cov

GLNA2_STRVR / P19432: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase II; GSII; EC 6.3.1.2 from Streptomyces viridochromogenes

47% id,
98% cov

Q86ZU6: glutamine synthetase (EC 6.3.1.2) from Tuber borchii

48% id,
91% cov

More...

glnA CU102_RS08860 CU102_08880 WP_106710730.1: type I glutamate--ammonia ligase
is similar to:
PaperBLAST

GLN1B_SALTY / P0A1P6: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Salmonella typhimurium
glnA: glutamate--ammonia ligase; EC 6.3.1.2 from Salmonella enterica
P0A1P6: glutamine synthetase (EC 6.3.1.2) from Salmonella enterica

64% id,
100% cov

glnA: glutamate--ammonia ligase; EC 6.3.1.2 from Escherichia coli
glnA / P0A9C5: glutamine synthetase (EC 6.3.1.2) from Escherichia coli

64% id,
100% cov

GLN1B_PSETA / Q3V5W6: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Pseudomonas taetrolens

62% id,
99% cov

More...

CU102_RS29025 CU102_28990 WP_106714457.1: glutamine synthetase family protein
is similar to:
PaperBLAST

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

49% id,
98% cov

Q0E5H7: glutamine synthetase (EC 6.3.1.2) from Halobacillus halophilus

32% id,
98% cov

P36687: glutamine synthetase (EC 6.3.1.2) from Pyrococcus woesei

31% id,
97% cov

More...

CU102_RS02280 CU102_02280 WP_106709310.1: glutamine synthetase family protein
is similar to:
PaperBLAST

P36687: glutamine synthetase (EC 6.3.1.2) from Pyrococcus woesei

34% id,
92% cov

GLNA_THEKO / O08467: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Thermococcus kodakarensis
O08467: glutamine synthetase (EC 6.3.1.2) from Pyrococcus sp.

37% id,
85% cov

GLNA1_METMA / Q8PY99: Glutamine synthetase; GS; Glutamate--ammonia ligase; EC 6.3.1.2 from Methanosarcina mazei
Q8PY99: glutamine synthetase (EC 6.3.1.2) from Methanosarcina mazei

32% id,
94% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory