Curated BLAST for Genomes

 

Curated BLAST

Searching in Limnohabitans curvus MWH-C5 (GCF_003063475.1)

Found 44 curated entries in PaperBLAST's database that match '1.4.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Limnohabitans curvus MWH-C5, or try another query

B9Z44_RS13105 B9Z44_13075 WP_108402642.1: D-amino acid dehydrogenase
is similar to:
PaperBLAST

DAO_BRADU / Q89F89: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Bradyrhizobium diazoefficiens

27% id,
96% cov

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

22% id,
47% cov

DAO_GLUPR / Q7X2D3: D-amino-acid oxidase; DAAO; DAMOX; DAO; GpDAAO-1; GpDAAO-2; EC 1.4.3.3 from Glutamicibacter protophormiae
Q7X2D3: D-amino-acid oxidase (EC 1.4.3.3) from Glutamicibacter protophormiae

43% id,
13% cov

More...

B9Z44_RS14800 B9Z44_14765 WP_108403030.1: D-amino acid dehydrogenase
is similar to:
PaperBLAST

DAO_BRADU / Q89F89: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Bradyrhizobium diazoefficiens

26% id,
99% cov

OXDA_RHOTO / P80324: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Rhodotorula toruloides
P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

25% id,
48% cov

A0PFJ3: D-amino-acid oxidase (EC 1.4.3.3) from Zea mays

30% id,
21% cov

More...

B9Z44_RS01370 B9Z44_01375 WP_108401502.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

DAO_RUBXD / Q1AYM8: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Rubrobacter xylanophilus
Q1AYM8: D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus

40% id,
17% cov

B9Z44_RS08180 B9Z44_08175 WP_108402143.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

DAO_GLUPR / Q7X2D3: D-amino-acid oxidase; DAAO; DAMOX; DAO; GpDAAO-1; GpDAAO-2; EC 1.4.3.3 from Glutamicibacter protophormiae
Q7X2D3: D-amino-acid oxidase (EC 1.4.3.3) from Glutamicibacter protophormiae

43% id,
15% cov

B9Z44_RS10540 B9Z44_10525 WP_108402409.1: D-amino acid dehydrogenase
is similar to:
PaperBLAST

DAO_STRCO / Q9X7P6: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Streptomyces coelicolor

47% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory