Curated BLAST for Genomes

 

Curated BLAST

Searching in Limnohabitans curvus MWH-C5 (GCF_003063475.1)

Found 75 curated entries in PaperBLAST's database that match '2.6.1.42' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Limnohabitans curvus MWH-C5, or try another query

B9Z44_RS07660 B9Z44_07655 WP_108402105.1: branched-chain amino acid transaminase
is similar to:
PaperBLAST

BPHYT_RS16285: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Burkholderia phytofirmans

68% id,
100% cov

Psest_0450: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Pseudomonas stutzeri

64% id,
99% cov

ilvE / O86428: branched-chain-amino-acid aminotransferase subunit (EC 2.6.1.6; EC 2.6.1.42) from Pseudomonas aeruginosa
O86428: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Pseudomonas aeruginosa

61% id,
99% cov

More...

B9Z44_RS12545 B9Z44_12515 WP_108402590.1: amino acid aminotransferase
is similar to:
PaperBLAST

TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli

51% id,
100% cov

B9Z44_RS11585 B9Z44_11570 WP_108402496.1: PLP-dependent aminotransferase family protein
is similar to:
PaperBLAST

AZOBR_RS06555: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense

40% id,
96% cov

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

40% id,
95% cov

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

38% id,
99% cov

More...

B9Z44_RS05690 B9Z44_05685 WP_108358415.1: PLP-dependent aminotransferase family protein
is similar to:
PaperBLAST

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

26% id,
86% cov

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

24% id,
79% cov

B9Z44_RS12110 B9Z44_12090 WP_108358965.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

22% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2310890-2312317 (frame +2) on NZ_NESP01000001.1 Limnohabitans curvus strain MWH-C5 LimA-MWH-C5-C1, whole genome shotgun sequence
is similar to:
PaperBLAST

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.
Also see hits to annotated proteins above

40% id,
97% cov

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.
Also see hits to annotated proteins above

39% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory