Curated BLAST for Genomes

 

Curated BLAST

Searching in Limnohabitans curvus MWH-C5 (GCF_003063475.1)

Found 4 curated entries in PaperBLAST's database that match '2.6.1.84' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Limnohabitans curvus MWH-C5, or try another query

B9Z44_RS00765 B9Z44_00765 WP_108401423.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

31% id,
92% cov

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

32% id,
81% cov

B9Z44_RS01960 B9Z44_01965 WP_108360051.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

30% id,
92% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

28% id,
92% cov

dapC B9Z44_RS14240 B9Z44_14210 WP_108358659.1: succinyldiaminopimelate transaminase
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

30% id,
89% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

30% id,
88% cov

B9Z44_RS12110 B9Z44_12090 WP_108358965.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

29% id,
92% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

28% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory