Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanospirillum lacunae Ki8-1 (GCF_003173355.1)

Found 4 curated entries in PaperBLAST's database that match '2.6.1.84' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Methanospirillum lacunae Ki8-1, or try another query

DK846_RS09685 DK846_09690 WP_109968729.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

34% id,
96% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

34% id,
93% cov

DK846_RS09780 DK846_09785 WP_109968747.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

35% id,
93% cov

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

34% id,
90% cov

DK846_RS02660 DK846_02660 WP_109967356.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

32% id,
93% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

31% id,
96% cov

DK846_RS09245 DK846_09250 WP_109968655.1: LL-diaminopimelate aminotransferase
is similar to:
PaperBLAST

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

30% id,
90% cov

DK846_RS04435 DK846_04435 WP_109967680.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

32% id,
48% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

28% id,
50% cov

hisC DK846_RS10140 DK846_10145 WP_109968812.1: histidinol-phosphate transaminase
is similar to:
PaperBLAST

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

23% id,
62% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory