Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanospirillum lacunae Ki8-1 (GCF_003173355.1)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanospirillum lacunae Ki8-1, or try another query

DK846_RS05625 DK846_05625 WP_109967963.1: Orn/Lys/Arg decarboxylase N-terminal domain-containing protein
is similar to:
PaperBLAST

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

36% id,
92% cov

H8ZI01: ornithine decarboxylase (EC 4.1.1.17) from Levilactobacillus brevis

36% id,
92% cov

Q5ZH57: ornithine decarboxylase (EC 4.1.1.17) from Oenococcus oeni

36% id,
91% cov

More...

lysA DK846_RS09250 DK846_09255 WP_109968826.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

26% id,
90% cov

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

24% id,
96% cov

C9W982: ornithine decarboxylase (EC 4.1.1.17) from Grateloupia imbricata

28% id,
83% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory