Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanospirillum lacunae Ki8-1 (GCF_003173355.1)

Found 9 curated entries in PaperBLAST's database that match '4.3.1.12' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanospirillum lacunae Ki8-1, or try another query

DK846_RS04585 DK846_04585 WP_109967706.1: TIGR00300 family protein
is similar to:
PaperBLAST

AGRE_NOSS1 / Q8YMD9: Bifunctional arginine dihydrolase/ornithine cyclodeaminase AgrE; Arginine-guanidine removing enzyme; EC 3.5.3.27; EC 4.3.1.12 from Nostoc sp.
agrE / Q8YMD9: arginine dihydrolase/ornithine cyclodeaminase (EC 4.3.1.12) from Nostoc sp.

43% id,
59% cov

ARGZ_SYNY3 / P74535: Bifunctional arginine dihydrolase/ornithine cyclodeaminase ArgZ; EC 3.5.3.27; EC 4.3.1.12 from Synechocystis sp.

41% id,
58% cov

DK846_RS11430 DK846_11435 WP_109969086.1: ornithine cyclodeaminase family protein
is similar to:
PaperBLAST

OCD_PSEPK / Q88H32: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Pseudomonas putida
Q88H32: ornithine cyclodeaminase (EC 4.3.1.12) from Pseudomonas putida

33% id,
73% cov

OCD_AGRT4 / Q59701: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium tumefaciens

31% id,
70% cov

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC 4.3.1.12) from Agrobacterium fabrum

30% id,
72% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory