Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanospirillum lacunae Ki8-1 (GCF_003173355.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methanospirillum lacunae Ki8-1, or try another query

tpiA DK846_RS01195 DK846_01195 WP_109967094.1: triose-phosphate isomerase
is similar to:
PaperBLAST

Q12UK2: triose-phosphate isomerase (EC 5.3.1.1) from Methanococcoides burtonii

55% id,
100% cov

B6YUE5: triose-phosphate isomerase (EC 5.3.1.1) from Thermococcus onnurineus

53% id,
98% cov

TPIS_PYRWO / P62003: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Pyrococcus woesei
tpiA / P62003: triose phosphate isomerase subunit (EC 5.3.1.1) from Pyrococcus woesei
P62002: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus furiosus
P62003: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus woesei

53% id,
96% cov

More...

DK846_RS16625 DK846_16630 WP_109970125.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

53% id,
60% cov

DK846_RS05215 DK846_05215 WP_109967919.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

39% id,
60% cov

pdxS DK846_RS09800 DK846_09805 WP_109968751.1: pyridoxal 5'-phosphate synthase lyase subunit PdxS
is similar to:
PaperBLAST

TPIS_PYRWO / P62003: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Pyrococcus woesei
tpiA / P62003: triose phosphate isomerase subunit (EC 5.3.1.1) from Pyrococcus woesei
P62002: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus furiosus
P62003: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus woesei

20% id,
91% cov

Q9HLB6: triose-phosphate isomerase (EC 5.3.1.1) from Thermoplasma acidophilum

30% id,
45% cov

B6YUE5: triose-phosphate isomerase (EC 5.3.1.1) from Thermococcus onnurineus

32% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory