Curated BLAST for Genomes

 

Curated BLAST

Searching in Nocardioides daejeonensis MJ31 (GCF_003194585.1)

Found 44 curated entries in PaperBLAST's database that match '1.4.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Nocardioides daejeonensis MJ31, or try another query

DNK54_RS20005 WP_110208778.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

DAO_RUBXD / Q1AYM8: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Rubrobacter xylanophilus
Q1AYM8: D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus

53% id,
96% cov

A0A077JN67: D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus

51% id,
97% cov

DAO_GLUPR / Q7X2D3: D-amino-acid oxidase; DAAO; DAMOX; DAO; GpDAAO-1; GpDAAO-2; EC 1.4.3.3 from Glutamicibacter protophormiae
Q7X2D3: D-amino-acid oxidase (EC 1.4.3.3) from Glutamicibacter protophormiae

44% id,
96% cov

More...

DNK54_RS16505 WP_110208089.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

30% id,
95% cov

OXDA_SCHPO / Q9Y7N4: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Schizosaccharomyces pombe

46% id,
8% cov

DNK54_RS19485 WP_110208683.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

26% id,
98% cov

DAO_STRCO / Q9X7P6: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Streptomyces coelicolor

28% id,
61% cov

OXDA_SCHPO / Q9Y7N4: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Schizosaccharomyces pombe

36% id,
16% cov

DNK54_RS02255 WP_110205306.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

DAO_MYCTA / A5U3S4: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Mycobacterium tuberculosis

28% id,
48% cov

DNK54_RS14595 WP_110207723.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

35% id,
36% cov

Q6R4Q9: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

43% id,
14% cov

OXDA_TRIVR / Q99042: D-amino-acid oxidase; DAAO; DAMOX; DAO; TvDAO1; EC 1.4.3.3 from Trigonopsis variabilis
Q99042: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

43% id,
14% cov

DNK54_RS01170 WP_110205127.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q6R4Q9: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

35% id,
14% cov

OXDA_TRIVR / Q99042: D-amino-acid oxidase; DAAO; DAMOX; DAO; TvDAO1; EC 1.4.3.3 from Trigonopsis variabilis
Q99042: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

35% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

151127-152686 (frame -1) on NZ_QHKZ01000004.1 Nocardioides daejeonensis strain MJ31 Scaffold4_1, whole genome shotgun sequence
is similar to:
PaperBLAST

OXDA3_CRYNH / J9VPE7: D-amino-acid oxidase 3; DAAO; DAMOX; DAO; CnDAO3; EC 1.4.3.3 from Cryptococcus neoformans

38% id,
17% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory