Curated BLAST for Genomes

 

Curated BLAST

Searching in Nocardioides daejeonensis MJ31 (GCF_003194585.1)

Found 17 curated entries in PaperBLAST's database that match '2.7.2.2' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Nocardioides daejeonensis MJ31, or try another query

DNK54_RS11255 WP_110207096.1: carbamate kinase
is similar to:
PaperBLAST

A7HNY8: carbamate kinase (EC 2.7.2.2) from Fervidobacterium nodosum

47% id,
100% cov

A6LPA8: carbamate kinase (EC 2.7.2.2) from Thermosipho melanesiensis

44% id,
99% cov

C6A5J0: carbamate kinase (EC 2.7.2.2) from Thermococcus sibiricus

42% id,
100% cov

More...

arcC DNK54_RS18790 WP_110208549.1: carbamate kinase
is similar to:
PaperBLAST

F0LK57: carbamate kinase (EC 2.7.2.2) from Thermococcus barophilus

44% id,
98% cov

C6A5J0: carbamate kinase (EC 2.7.2.2) from Thermococcus sibiricus

44% id,
99% cov

A7HNY8: carbamate kinase (EC 2.7.2.2) from Fervidobacterium nodosum

43% id,
99% cov

More...

argB DNK54_RS04740 WP_110206425.1: acetylglutamate kinase
is similar to:
PaperBLAST

ARCC_HALSA / Q48295: Carbamate kinase; CK; EC 2.7.2.2 from Halobacterium salinarum
arcC / GB|AAG20947.1: carbamate kinase; EC 2.7.2.2 from Halobacterium salinarum

35% id,
47% cov

ALLK_ECOLI / P37306: Carbamate kinase; Catabolic carbamate kinase; Catabolic CK; EC 2.7.2.2 from Escherichia coli

30% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory