Curated BLAST for Genomes

 

Curated BLAST

Searching in Nocardioides daejeonensis MJ31 (GCF_003194585.1)

Found 8 curated entries in PaperBLAST's database that match '3.5.1.30' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Nocardioides daejeonensis MJ31, or try another query

DNK54_RS14440 WP_110207698.1: carbon-nitrogen hydrolase family protein
is similar to:
PaperBLAST

AO356_14225: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

35% id,
96% cov

Pf6N2E2_4777: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

35% id,
96% cov

AO353_07425: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

34% id,
96% cov

More...

DNK54_RS08055 WP_110206413.1: carbon-nitrogen hydrolase family protein
is similar to:
PaperBLAST

B3IVI7: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida

33% id,
100% cov

davA / Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida
Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida

33% id,
100% cov

DNK54_RS16985 WP_110208198.1: carbon-nitrogen hydrolase family protein
is similar to:
PaperBLAST

PfGW456L13_1170: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

32% id,
97% cov

Pf1N1B4_2504: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

32% id,
97% cov

davA / Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida
Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida

35% id,
88% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory