Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodobacter viridis JA737 (GCF_003217355.1)

Found 19 curated entries in PaperBLAST's database that match '1.1.99.6' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Rhodobacter viridis JA737, or try another query

C8J30_RS10600 C8J30_10782 WP_110805826.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

PGA1_c29720: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Phaeobacter inhibens

 76% id,
99% cov

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

 62% id,
97% cov

Psest_3841: D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 49% id,
92% cov

More...

glcF C8J30_RS10610 C8J30_10784 WP_110805828.1: glycolate oxidase subunit GlcF
is similar to:		 PaperBLAST

PGA1_c29700: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Phaeobacter inhibens

 70% id,
96% cov

SMc00926: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Sinorhizobium meliloti

 64% id,
97% cov

RR42_RS17315: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Cupriavidus basilensis

 41% id,
100% cov

More...

C8J30_RS10605 C8J30_10783 WP_110805827.1: FAD-binding protein
is similar to:		 PaperBLAST

PGA1_c29710: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Phaeobacter inhibens

 54% id,
100% cov

SMc00833: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Sinorhizobium meliloti

 45% id,
96% cov

RR42_RS17310: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Cupriavidus basilensis

 39% id,
95% cov

More...

C8J30_RS16340 C8J30_11835 WP_110806911.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

E6N788: (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Candidatus Caldarchaeum

 34% id,
97% cov

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 35% id,
93% cov

G4RPF4: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Thermoproteus tenax

 32% id,
100% cov

More...

C8J30_RS11450 C8J30_10876 WP_110805985.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 32% id,
99% cov

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

 32% id,
96% cov

DLD_ANAHA / D4MUV9: D-lactate dehydrogenase; EC 1.1.99.6 from Anaerostipes hadrus

 31% id,
97% cov

More...

C8J30_RS15350 C8J30_11544 WP_110806751.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 33% id,
94% cov

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 33% id,
91% cov

DLD_ANAHA / D4MUV9: D-lactate dehydrogenase; EC 1.1.99.6 from Anaerostipes hadrus

 30% id,
90% cov

More...

C8J30_RS15405 C8J30_11555 WP_110806726.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

DLD_ANAHA / D4MUV9: D-lactate dehydrogenase; EC 1.1.99.6 from Anaerostipes hadrus

 25% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory