Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodobacter viridis JA737 (GCF_003217355.1)

Found 22 curated entries in PaperBLAST's database that match '1.3.8.5' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Rhodobacter viridis JA737, or try another query

C8J30_RS00780 C8J30_101162 WP_110803830.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

MBCD_SOLTU / Q9FS88: 2-methylacyl-CoA dehydrogenase, mitochondrial; 2-methylbutanoyl-CoA dehydrogenase; 2-methylbutyryl-CoA dehydrogenase; 2MBCD; Isovaleryl-CoA dehydrogenase 1; St-IVD1; EC 1.3.8.5 from Solanum tuberosum

57% id,
93% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

41% id,
99% cov

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

40% id,
99% cov

More...

C8J30_RS01050 C8J30_101216 WP_110803878.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

SO1679: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Shewanella oneidensis

48% id,
99% cov

ACAD8_HUMAN / Q9UKU7: Isobutyryl-CoA dehydrogenase, mitochondrial; IBDH; Activator-recruited cofactor 42 kDa component; ARC42; Acyl-CoA dehydrogenase family member 8; ACAD-8; EC 1.3.8.5 from Homo sapiens

52% id,
91% cov

PP_3492: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas putida

41% id,
98% cov

More...

C8J30_RS15730 C8J30_11640 WP_110806794.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

37% id,
99% cov

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

37% id,
99% cov

AO353_25670: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

36% id,
97% cov

More...

C8J30_RS04420 C8J30_102234 WP_110804512.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

34% id,
99% cov

PS417_13840: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

34% id,
99% cov

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

34% id,
99% cov

More...

C8J30_RS06285 C8J30_103175 WP_110804863.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Psest_2440: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

33% id,
88% cov

PP_3492: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas putida

32% id,
90% cov

PS417_13850: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

31% id,
90% cov

More...

C8J30_RS06645 C8J30_103247 WP_110804927.1: acyl-CoA dehydrogenase C-terminal domain-containing protein
is similar to:
PaperBLAST

PS417_13840: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

31% id,
90% cov

AO353_25670: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

31% id,
90% cov

Psest_2440: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

30% id,
90% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

161830-163305 (frame +1) on NZ_QJTK01000001.1 Rhodobacter viridis strain JA737 Ga0191652_101, whole genome shotgun sequence
is similar to:
PaperBLAST

MBCD_SOLTU / Q9FS88: 2-methylacyl-CoA dehydrogenase, mitochondrial; 2-methylbutanoyl-CoA dehydrogenase; 2-methylbutyryl-CoA dehydrogenase; 2MBCD; Isovaleryl-CoA dehydrogenase 1; St-IVD1; EC 1.3.8.5 from Solanum tuberosum
Also see hits to annotated proteins above

56% id,
96% cov

ACDSB_RAT / P70584: Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial; SBCAD; 2-methyl branched chain acyl-CoA dehydrogenase; 2-MEBCAD; 2-methylbutyryl-coenzyme A dehydrogenase; 2-methylbutyryl-CoA dehydrogenase; EC 1.3.8.5 from Rattus norvegicus
Acadsb / P70584: 2-methyl branched chain acyl-CoA dehydrogenase subunit (EC 1.3.8.5) from Rattus norvegicus
Also see hits to annotated proteins above

34% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory