Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodobacter viridis JA737 (GCF_003217355.1)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.16' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Rhodobacter viridis JA737, or try another query

xylB C8J30_RS04465 C8J30_102243 WP_110804520.1: xylulokinase
is similar to:
PaperBLAST

Echvi_0515: Ribulokinase (EC 2.7.1.16) from Echinicola vietnamensis

28% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory