Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodobacter viridis JA737 (GCF_003217355.1)

Found 31 curated entries in PaperBLAST's database that match '2.7.2.1' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Rhodobacter viridis JA737, or try another query

C8J30_RS16350 C8J30_11837 WP_110806913.1: acetate/propionate family kinase
is similar to:
PaperBLAST

ACKA_METTE / P38502: Acetate kinase; Acetokinase; EC 2.7.2.1 from Methanosarcina thermophila
P38502: acetate kinase (EC 2.7.2.1) from Methanosarcina thermophila

41% id,
97% cov

ACKA_BACSU / P37877: Acetate kinase; Acetokinase; EC 2.7.2.1 from Bacillus subtilis

40% id,
97% cov

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

39% id,
99% cov

More...

C8J30_RS13140 C8J30_110104 WP_110806305.1: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

29% id,
91% cov

accC C8J30_RS13905 C8J30_11219 WP_110806455.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

24% id,
75% cov

C8J30_RS16815 WP_281269384.1: hypothetical protein
is similar to:
PaperBLAST

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

51% id,
16% cov

B2RK02: acetate kinase (EC 2.7.2.1) from Porphyromonas gingivalis

48% id,
16% cov

Q9F1X7: acetate kinase (EC 2.7.2.1) from Fructilactobacillus sanfranciscensis

45% id,
17% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory