Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodobacter viridis JA737 (GCF_003217355.1)

Found 15 curated entries in PaperBLAST's database that match '2.7.2.15' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Rhodobacter viridis JA737, or try another query

C8J30_RS16350 C8J30_11837 WP_110806913.1: acetate/propionate family kinase
is similar to:
PaperBLAST

ackA / E3PRH0: acetate kinase (EC 2.7.2.15) from Acetoanaerobium sticklandii

40% id,
98% cov

ackA / P71104: acetate kinase monomer (EC 2.7.2.15) from Clostridium acetobutylicum

40% id,
98% cov

PDUW_SALTY / P74879: Propionate kinase PduW; EC 2.7.2.15 from Salmonella typhimurium

40% id,
97% cov

More...

C8J30_RS13140 C8J30_110104 WP_110806305.1: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

29% id,
91% cov

accC C8J30_RS13905 C8J30_11219 WP_110806455.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

24% id,
75% cov

C8J30_RS16815 WP_281269384.1: hypothetical protein
is similar to:
PaperBLAST

TDCD_SALTY / O06961: Propionate kinase; EC 2.7.2.15 from Salmonella typhimurium
O06961: propionate kinase (EC 2.7.2.15) from Salmonella enterica

47% id,
16% cov

ackA / P71104: acetate kinase monomer (EC 2.7.2.15) from Clostridium acetobutylicum

46% id,
16% cov

AckA / b2296: acetate kinase (EC 2.7.2.15; EC 2.7.2.1; EC 2.7.2.7; EC 2.7.2.14) from Escherichia coli
ackA / P0A6A3: acetate kinase (EC 2.7.2.15; EC 2.7.2.7) from Escherichia coli

44% id,
17% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory