Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodobacter viridis JA737 (GCF_003217355.1)

Found 119 curated entries in PaperBLAST's database that match '4.1.2.13' as complete word(s).

These curated entries have 94 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Rhodobacter viridis JA737, or try another query

fba C8J30_RS02175 C8J30_101446 WP_110804069.1: class II fructose-bisphosphate aldolase
is similar to:
PaperBLAST

fbaA / Q55664: class II fructose-bisphosphate aldolase/sedoheptulose-1,7-bisphosphate aldolase monomer (EC 4.1.2.13) from Synechocystis sp.
Q55664: fructose-bisphosphate aldolase (EC 4.1.2.13) from Synechocystis sp.

67% id,
97% cov

ALF_XANFL / Q56815: Fructose-bisphosphate aldolase; FBP aldolase; FBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 from Xanthobacter flavus

65% id,
99% cov

ALF_NOSS1 / Q8YNK2: Fructose-bisphosphate aldolase; FBP aldolase; FBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 from Nostoc sp.

66% id,
97% cov

More...

C8J30_RS02965 C8J30_101600 WP_110804301.1: fructose bisphosphate aldolase
is similar to:
PaperBLAST

fbaB / P74309: class I fructose-bisphosphate aldolase/sedoheptulose-1,7-bisphosphate aldolase monomer (EC 4.1.2.13) from Synechocystis sp.

55% id,
98% cov

ALFP3_ARATH / Q9ZU52: Fructose-bisphosphate aldolase 3, chloroplastic; AtFBA3; Protein PIGMENT DEFECTIVE 345; EC 4.1.2.13 from Arabidopsis thaliana

27% id,
74% cov

ALF2_PLABA / P49577: Fructose-bisphosphate aldolase 2; ALDO-2; EC 4.1.2.13 from Plasmodium berghei

28% id,
54% cov

More...

lsrF C8J30_RS10520 C8J30_10766 WP_110805915.1: 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase
is similar to:
PaperBLAST

aroA' / Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase monomer (EC 4.1.2.13; EC 2.2.1.10) from Methanocaldococcus jannaschii

35% id,
95% cov

ALF1_HALS3 / B0R3Y0: Fructose-bisphosphate aldolase class 1; Fructose-bisphosphate aldolase class I; FBP aldolase; EC 4.1.2.13 from Halobacterium salinarum

25% id,
95% cov

pyrF C8J30_RS05315 C8J30_102414 WP_110804673.1: orotidine-5'-phosphate decarboxylase
is similar to:
PaperBLAST

ALF1_HALS3 / B0R3Y0: Fructose-bisphosphate aldolase class 1; Fructose-bisphosphate aldolase class I; FBP aldolase; EC 4.1.2.13 from Halobacterium salinarum

27% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory