Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodobacter viridis JA737 (GCF_003217355.1)

Found 1 curated entries in PaperBLAST's database that match '4.1.2.18' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Rhodobacter viridis JA737, or try another query

C8J30_RS16950 C8J30_1222 WP_110807122.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

kdgA / O54288: KDG-aldolase subunit (EC 4.1.2.28; EC 4.1.2.18; EC 4.1.2.51) from Saccharolobus solfataricus

26% id,
99% cov

C8J30_RS14455 C8J30_11337 WP_110806548.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

kdgA / O54288: KDG-aldolase subunit (EC 4.1.2.28; EC 4.1.2.18; EC 4.1.2.51) from Saccharolobus solfataricus

25% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory