Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodobacter viridis JA737 (GCF_003217355.1)

Found 12 curated entries in PaperBLAST's database that match '4.3.1.1' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Rhodobacter viridis JA737, or try another query

fumC C8J30_RS13165 C8J30_110109 WP_110806310.1: class II fumarate hydratase
is similar to:
PaperBLAST

ASPA_PSECO / P0DXC8: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Pseudomonas canavaninivorans

42% id,
97% cov

ASPA_BACSP / Q9LCC6: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Bacillus sp.
Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

42% id,
98% cov

ASPA_PSEAE / Q9HTD7: Aspartate ammonia-lyase; Aspartase; PA-AspA; EC 4.3.1.1 from Pseudomonas aeruginosa
Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

41% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory