Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodobacter viridis JA737 (GCF_003217355.1)

Found 6 curated entries in PaperBLAST's database that match '5.1.1.5' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Rhodobacter viridis JA737, or try another query

alr C8J30_RS01100 C8J30_101226 WP_110803887.1: alanine racemase
is similar to:
PaperBLAST

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis

26% id,
88% cov

menC C8J30_RS16155 C8J30_11742 WP_110806872.1: o-succinylbenzoate synthase
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

42% id,
50% cov

argC C8J30_RS07065 C8J30_103333 WP_110804999.1: N-acetyl-gamma-glutamyl-phosphate reductase
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

42% id,
47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

232104-233180 (frame -1) on NZ_QJTK01000001.1 Rhodobacter viridis strain JA737 Ga0191652_101, whole genome shotgun sequence
is similar to:
PaperBLAST

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis
Also see hits to annotated proteins above

25% id,
91% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory