Searching in Rhodobacter viridis JA737 (GCF_003217355.1)
Found 6 curated entries in PaperBLAST's database that match '5.1.1.5' as complete word(s).
These curated entries have 4 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Rhodobacter viridis JA737, or try another query
alr C8J30_RS01100 C8J30_101226 WP_110803887.1: alanine racemase is similar to: | PaperBLAST |
LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis | 26% id, 88% cov |
menC C8J30_RS16155 C8J30_11742 WP_110806872.1: o-succinylbenzoate synthase is similar to: | PaperBLAST |
C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium | 42% id, 50% cov |
argC C8J30_RS07065 C8J30_103333 WP_110804999.1: N-acetyl-gamma-glutamyl-phosphate reductase is similar to: | PaperBLAST |
C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium | 42% id, 47% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
232104-233180 (frame -1) on NZ_QJTK01000001.1 Rhodobacter viridis strain JA737 Ga0191652_101, whole genome shotgun sequence is similar to: | PaperBLAST |
LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis | 25% id, 91% cov |
Lawrence Berkeley National Laboratory