Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinomonas arctica 328 (GCF_003259225.1)

Found 17 curated entries in PaperBLAST's database that match '4.2.1.82' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Marinomonas arctica 328, or try another query

araD DK187_RS20575 WP_111609172.1: L-arabinonate dehydratase
is similar to:		 PaperBLAST

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

 45% id,
99% cov

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

 44% id,
99% cov

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

 43% id,
99% cov

More...

DK187_RS11915 WP_111607570.1: IlvD/Edd family dehydratase
is similar to:		 PaperBLAST

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

 44% id,
100% cov

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

 43% id,
100% cov

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

 39% id,
100% cov

More...

araD DK187_RS15785 WP_111608298.1: L-arabinonate dehydratase
is similar to:		 PaperBLAST

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

 39% id,
95% cov

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

 38% id,
95% cov

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

 36% id,
96% cov

More...

edd DK187_RS13445 WP_111607870.1: phosphogluconate dehydratase
is similar to:		 PaperBLAST

YJHG_ECOLI / P39358: D-xylonate dehydratase YjhG; EC 4.2.1.82 from Escherichia coli
YjhG / b4297: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yjhG / P39358: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
P39358: xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

 31% id,
81% cov

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

 29% id,
84% cov

XYLD_CAUVC / Q9A9Z2: D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides
Q9A9Z2: xylonate dehydratase (EC 4.2.1.82) from Caulobacter vibrioides

 29% id,
83% cov

More...

DK187_RS15885 WP_111608318.1: glucarate dehydratase family protein
is similar to:		 PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

 26% id,
96% cov

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

 27% id,
84% cov

ilvD DK187_RS19975 WP_111609067.1: dihydroxy-acid dehydratase
is similar to:		 PaperBLAST

YAGF_ECOLI / P77596: D-xylonate dehydratase YagF; EC 4.2.1.82 from Escherichia coli
YagF / b0269: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yagF / P77596: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

 32% id,
75% cov

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

 36% id,
55% cov

XYLD_CAUVC / Q9A9Z2: D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides
Q9A9Z2: xylonate dehydratase (EC 4.2.1.82) from Caulobacter vibrioides

 36% id,
55% cov

More...

manD DK187_RS02450 WP_111605750.1: D-mannonate dehydratase ManD
is similar to:		 PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

 27% id,
87% cov

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

 28% id,
83% cov

DK187_RS11660 WP_111607524.1: mandelate racemase family protein
is similar to:		 PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

 28% id,
86% cov

DK187_RS18195 WP_111608751.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:		 PaperBLAST

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

 26% id,
76% cov

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

 27% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory