Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodanobacter denitrificans FW104-10B01 (GCF_021560695.1)

Found 44 curated entries in PaperBLAST's database that match '2.6.1.19' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Rhodanobacter denitrificans FW104-10B01, or try another query

LRK54_RS06590 LRK54_06590 WP_027489558.1: acetylornithine/succinylornithine family transaminase
is similar to:		 PaperBLAST

slr1022 / P73133: bifunctional acetylornithine transaminase/4-aminobutyrate—2-oxoglutarate transaminase (EC 2.6.1.19; EC 2.6.1.11) from Synechocystis sp.
P73133: acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp.

 48% id,
92% cov

B1XNF8: acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp.

 46% id,
95% cov

gabT / Q0K2K2: 4-aminobutyrate aminotransferase monomer (EC 2.6.1.19) from Cupriavidus necator
Q0K2K2: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Cupriavidus necator

 35% id,
99% cov

More...

LRK54_RS04500 LRK54_04500 WP_027490801.1: acetyl ornithine aminotransferase family protein
is similar to:		 PaperBLAST

A0A5B8KQ12: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Agrobacterium tumefaciens

 41% id,
93% cov

B1XNF8: acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp.

 39% id,
94% cov

PUUE_ECOLI / P50457: 4-aminobutyrate aminotransferase PuuE; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; EC 2.6.1.19 from Escherichia coli
GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli
puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli

 39% id,
95% cov

More...

hemL LRK54_RS06580 LRK54_06580 WP_007514216.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:		 PaperBLAST

A0A5B8KQ12: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Agrobacterium tumefaciens

 32% id,
100% cov

GABT_ECOLI / P22256: 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli
GabT / b2662: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli
gabT / P22256: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli

 32% id,
88% cov

gabT / Q4KKA1: 4-aminobutyrate transaminase subunit (EC 2.6.1.19) from Pseudomonas fluorescens

 30% id,
88% cov

More...

LRK54_RS04150 LRK54_04150 WP_007507028.1: adenosylmethionine--8-amino-7-oxononanoate transaminase
is similar to:		 PaperBLAST

AO353_08585: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens

 34% id,
91% cov

PS417_27130: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas simiae

 33% id,
93% cov

AO356_13150: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens

 34% id,
91% cov

More...

LRK54_RS04480 LRK54_04480 WP_027490798.1: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

GABT_ECOLI / P22256: 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli
GabT / b2662: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli
gabT / P22256: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli

 33% id,
89% cov

A0A0U4XQS6: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 5-aminovalerate transaminase (EC 2.6.1.48) from Corynebacterium glutamicum

 33% id,
89% cov

Q8NT35: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Corynebacterium glutamicum

 33% id,
89% cov

More...

LRK54_RS03035 LRK54_03035 WP_027489918.1: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

gabT / Q0K2K2: 4-aminobutyrate aminotransferase monomer (EC 2.6.1.19) from Cupriavidus necator
Q0K2K2: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Cupriavidus necator

 31% id,
93% cov

AO353_08585: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens

 29% id,
95% cov

A0A5B8KQ12: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Agrobacterium tumefaciens

 29% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory