Curated BLAST for Genomes

 

Curated BLAST

Searching in Flavobacterium glycines Gm-149 (GCF_900100165.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Flavobacterium glycines Gm-149, or try another query

lysA BLR17_RS08045 SAMN05192550_1630 WP_066324151.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis

59% id,
97% cov

DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima

34% id,
99% cov

DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli

34% id,
97% cov

More...

thrA BLR17_RS14640 SAMN05192550_2976 WP_066329102.1: bifunctional aspartate kinase/homoserine dehydrogenase I
is similar to:
PaperBLAST

ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

30% id,
51% cov

thrA BLR17_RS00255 SAMN05192550_0052 WP_066328676.1: bifunctional aspartate kinase/homoserine dehydrogenase I
is similar to:
PaperBLAST

ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

24% id,
53% cov

BLR17_RS04505 SAMN05192550_0917 WP_066327343.1: aspartate kinase
is similar to:
PaperBLAST

ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

29% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory