Curated BLAST for Genomes

 

Curated BLAST

Searching in Flavobacterium glycines Gm-149 (GCF_900100165.1)

Found 8 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase small subunit' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Flavobacterium glycines Gm-149, or try another query

leuD BLR17_RS00955 SAMN05192550_0195 WP_066328411.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

LEUD_RHIJ3 / Q1MA52: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Rhizobium johnstonii

48% id,
95% cov

LEUD1_SALTY / P04787: 3-isopropylmalate dehydratase small subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 from Salmonella typhimurium

44% id,
97% cov

leuD / BAC65258.1: 3-isopropylmalate dehydratase small subunit from Burkholderia multivorans

45% id,
94% cov

More...

BLR17_RS07090 SAMN05192550_1442 WP_066324960.1: aconitate hydratase
is similar to:
PaperBLAST

LEUD3_ARATH / Q9ZW85: 3-isopropylmalate dehydratase small subunit 1; AtLEUD3; Isopropylmalate isomerase small subunit 1; IPMI SSU1; EC 4.2.1.33 from Arabidopsis thaliana

30% id,
59% cov

LEUD_MYCBO / P65278: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis

26% id,
61% cov

LEUD1_ARATH / Q9ZW84: 3-isopropylmalate dehydratase small subunit 2; 2-(omega-methylthio)alkylmalate dehydratase small subunit 2; AtLEUD1; Isopropylmalate isomerase 2; Isopropylmalate isomerase small subunit 2; IPMI SSU2; Methylthioalkylmalate isomerase small subunit; MAM-IS; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana

28% id,
57% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory