Curated BLAST for Genomes

 

Curated BLAST

Searching in Flavobacterium glycines Gm-149 (GCF_900100165.1)

Found 3 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase%LeuC' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Flavobacterium glycines Gm-149, or try another query

leuC BLR17_RS00950 SAMN05192550_0194 WP_066328412.1: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

LeuC / b0072: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli
leuC / P0A6A6: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli

53% id,
100% cov

DVU2982: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

29% id,
100% cov

BLR17_RS07085 SAMN05192550_1441 WP_066324962.1: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
is similar to:
PaperBLAST

DVU2982: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

23% id,
55% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory