Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)

Found 37 curated entries in PaperBLAST's database that match '1.1.1.41' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query

icd BLS63_RS01575 SAMN05216603_101319 WP_090438861.1: NADP-dependent isocitrate dehydrogenase is similar to:	PaperBLAST
Q8GAX0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Acidithiobacillus thiooxidans	59% id, 98% cov
Q8U488: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Pyrococcus furiosus	48% id, 99% cov
G1APK3: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rhodotorula toruloides	32% id, 91% cov
IDH3A_MOUSE / Q9D6R2: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Mus musculus Q9D6R2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Mus musculus	32% id, 89% cov
IDH3A_HUMAN / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Homo sapiens P50213: isocitrate dehydrogenase (NAD+) (subunit 2/2) (EC 1.1.1.41) from Homo sapiens	32% id, 89% cov
IDH3A_PIG / P56471: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Sus scrofa	32% id, 89% cov
IDH1_SCHPO / O13696: Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Schizosaccharomyces pombe idh1 / RF\|NP_594397.1: isocitrate dehydrogenase (NAD+) subunit 1 Idh1; EC 1.1.1.41 from Schizosaccharomyces pombe	30% id, 93% cov
IDH3A_RAT / Q99NA5: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Rattus norvegicus Q99NA5: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rattus norvegicus	31% id, 89% cov
IDH5_ARATH / Q945K7: Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial; IDH-V; Isocitric dehydrogenase 5; NAD(+)-specific ICDH 5; EC 1.1.1.41 from Arabidopsis thaliana Q945K7: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	32% id, 87% cov
IDH3A_BOVIN / P41563: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitrate dehydrogenase subunits 3/4; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Bos taurus	31% id, 89% cov
IDH2_YEAST / P28241: Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae P28241: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae	30% id, 90% cov
idh2 / RF\|NP_595203.1: isocitrate dehydrogenase (NAD+) subunit 2; EC 1.1.1.41 from Schizosaccharomyces pombe	30% id, 89% cov
IDH2_SCHPO / Q9USP8: Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Schizosaccharomyces pombe	30% id, 89% cov
IDH6_ARATH / Q8LG77: Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial; IDH-VI; Isocitric dehydrogenase 6; NAD(+)-specific ICDH 6; EC 1.1.1.41 from Arabidopsis thaliana Q8LG77: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	31% id, 84% cov
G1APK2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rhodotorula toruloides	32% id, 79% cov
IDH1_YEAST / P28834: Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae P28834: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae	28% id, 86% cov
O81796: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	29% id, 79% cov
IDH3A_CAEEL / Q93714: Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Caenorhabditis elegans	32% id, 69% cov
O43837: isocitrate dehydrogenase (NAD+) (subunit 1/2) (EC 1.1.1.41) from Homo sapiens	26% id, 86% cov
P51553: isocitrate dehydrogenase (NAD+) (subunit 1/3) (EC 1.1.1.41) from Homo sapiens	28% id, 72% cov
P93032: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	34% id, 47% cov
P93032: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	32% id, 45% cov
Q8LFC0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	32% id, 45% cov
Q8LFC0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	34% id, 40% cov
More...

leuB BLS63_RS07400 SAMN05216603_103347 WP_090442004.1: 3-isopropylmalate dehydrogenase is similar to:	PaperBLAST
IDH1_YEAST / P28834: Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae P28834: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae	33% id, 88% cov
IDH6_ARATH / Q8LG77: Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial; IDH-VI; Isocitric dehydrogenase 6; NAD(+)-specific ICDH 6; EC 1.1.1.41 from Arabidopsis thaliana Q8LG77: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	33% id, 87% cov
Q8LFC0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	32% id, 90% cov
IDH1_SCHPO / O13696: Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Schizosaccharomyces pombe idh1 / RF\|NP_594397.1: isocitrate dehydrogenase (NAD+) subunit 1 Idh1; EC 1.1.1.41 from Schizosaccharomyces pombe	30% id, 94% cov
G1APK2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rhodotorula toruloides	32% id, 88% cov
O81796: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	31% id, 90% cov
IDH5_ARATH / Q945K7: Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial; IDH-V; Isocitric dehydrogenase 5; NAD(+)-specific ICDH 5; EC 1.1.1.41 from Arabidopsis thaliana Q945K7: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	32% id, 87% cov
IDH3A_BOVIN / P41563: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitrate dehydrogenase subunits 3/4; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Bos taurus	33% id, 84% cov
P93032: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	31% id, 90% cov
IDH3A_PIG / P56471: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Sus scrofa	32% id, 84% cov
IDH3A_MOUSE / Q9D6R2: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Mus musculus Q9D6R2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Mus musculus	32% id, 84% cov
IDH3A_HUMAN / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Homo sapiens P50213: isocitrate dehydrogenase (NAD+) (subunit 2/2) (EC 1.1.1.41) from Homo sapiens	32% id, 84% cov
IDH3A_RAT / Q99NA5: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Rattus norvegicus Q99NA5: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rattus norvegicus	32% id, 84% cov
Q8U488: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Pyrococcus furiosus	30% id, 88% cov
P51553: isocitrate dehydrogenase (NAD+) (subunit 1/3) (EC 1.1.1.41) from Homo sapiens	31% id, 83% cov
IDH3A_CAEEL / Q93714: Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Caenorhabditis elegans	36% id, 73% cov
IDH2_YEAST / P28241: Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae P28241: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae	35% id, 73% cov
idh2 / RF\|NP_595203.1: isocitrate dehydrogenase (NAD+) subunit 2; EC 1.1.1.41 from Schizosaccharomyces pombe	34% id, 67% cov
IDH2_SCHPO / Q9USP8: Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Schizosaccharomyces pombe	34% id, 67% cov
G1APK3: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rhodotorula toruloides	33% id, 66% cov
Q8GAX0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Acidithiobacillus thiooxidans	30% id, 60% cov
A4ADB8: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Congregibacter litoralis	21% id, 36% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

343363-344490 (frame +1) on NZ_FNCT01000003.1 Pseudomonas benzenivorans strain DSM 8628, whole genome shotgun sequence is similar to:	PaperBLAST
IDH1_YEAST / P28834: Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae P28834: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae Also see hits to annotated proteins above	33% id, 96% cov
Q8LFC0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana Also see hits to annotated proteins above	32% id, 92% cov
O81796: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana Also see hits to annotated proteins above	31% id, 92% cov
O43837: isocitrate dehydrogenase (NAD+) (subunit 1/2) (EC 1.1.1.41) from Homo sapiens Also see hits to annotated proteins above	31% id, 85% cov
More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory