Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)

Found 3 curated entries in PaperBLAST's database that match '1.14.13.33' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query

pobA BLS63_RS16865 SAMN05216603_11026 WP_090446812.1: 4-hydroxybenzoate 3-monooxygenase
is similar to:
PaperBLAST

PRAI_PAESP / C4TP09: 4-hydroxybenzoate 3-monooxygenase (NAD(P)H); 4-hydroxybenzoate 3-hydroxylase; 4HB 3-hydroxylase; EC 1.14.13.33 from Paenibacillus sp.

53% id,
100% cov

BLS63_RS14230 SAMN05216603_107257 WP_090445636.1: bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase
is similar to:
PaperBLAST

PHHA_EMENI / C8VBV0: p-hydroxybenzoate-m-hydroxylase; 4-hydroxybenzoate-3-monooxygenase phhA; FAD-dependent monooxygenase phhA; EC 1.14.13.33 from Emericella nidulans

24% id,
60% cov

PHHA_ASPNC / A2QGH7: p-hydroxybenzoate-m-hydroxylase A; 4-hydroxybenzoate-3-monooxygenase phhA; FAD-dependent monooxygenase phhA; EC 1.14.13.33 from Aspergillus niger

24% id,
58% cov

BLS63_RS17000 SAMN05216603_11052 WP_090446858.1: bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase
is similar to:
PaperBLAST

PRAI_PAESP / C4TP09: 4-hydroxybenzoate 3-monooxygenase (NAD(P)H); 4-hydroxybenzoate 3-hydroxylase; 4HB 3-hydroxylase; EC 1.14.13.33 from Paenibacillus sp.

23% id,
46% cov

PHHA_ASPNC / A2QGH7: p-hydroxybenzoate-m-hydroxylase A; 4-hydroxybenzoate-3-monooxygenase phhA; FAD-dependent monooxygenase phhA; EC 1.14.13.33 from Aspergillus niger

32% id,
25% cov

PHHA_EMENI / C8VBV0: p-hydroxybenzoate-m-hydroxylase; 4-hydroxybenzoate-3-monooxygenase phhA; FAD-dependent monooxygenase phhA; EC 1.14.13.33 from Emericella nidulans

31% id,
25% cov

BLS63_RS16070 SAMN05216603_10972 WP_090446478.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

PRAI_PAESP / C4TP09: 4-hydroxybenzoate 3-monooxygenase (NAD(P)H); 4-hydroxybenzoate 3-hydroxylase; 4HB 3-hydroxylase; EC 1.14.13.33 from Paenibacillus sp.

33% id,
22% cov

ubiH BLS63_RS11190 SAMN05216603_105264 WP_090443913.1: 2-octaprenyl-6-methoxyphenyl hydroxylase
is similar to:
PaperBLAST

PHHA_EMENI / C8VBV0: p-hydroxybenzoate-m-hydroxylase; 4-hydroxybenzoate-3-monooxygenase phhA; FAD-dependent monooxygenase phhA; EC 1.14.13.33 from Emericella nidulans

26% id,
16% cov

PHHA_ASPNC / A2QGH7: p-hydroxybenzoate-m-hydroxylase A; 4-hydroxybenzoate-3-monooxygenase phhA; FAD-dependent monooxygenase phhA; EC 1.14.13.33 from Aspergillus niger

27% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory