Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)

Found 1 curated entries in PaperBLAST's database that match '1.3.99.10' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query

BLS63_RS24330 SAMN05216603_12255 WP_090448386.1: isovaleryl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

64% id,
87% cov

BLS63_RS26370 SAMN05216603_1431 WP_090448746.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

37% id,
93% cov

BLS63_RS20770 SAMN05216603_11541 WP_090447701.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

36% id,
86% cov

BLS63_RS24295 SAMN05216603_12248 WP_090448379.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

34% id,
88% cov

BLS63_RS07275 SAMN05216603_103322 WP_090441943.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

38% id,
80% cov

BLS63_RS14585 SAMN05216603_10814 WP_090445837.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

34% id,
88% cov

BLS63_RS21710 SAMN05216603_1178 WP_090447885.1: isobutyryl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

33% id,
87% cov

atuD BLS63_RS18320 SAMN05216603_111140 WP_090447224.1: citronellyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

33% id,
86% cov

BLS63_RS04965 SAMN05216603_102380 WP_090440614.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

31% id,
85% cov

BLS63_RS17700 SAMN05216603_11115 WP_090447104.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

29% id,
85% cov

BLS63_RS21960 SAMN05216603_11759 WP_090447934.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

28% id,
86% cov

BLS63_RS05135 SAMN05216603_102414 WP_090440709.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

27% id,
78% cov

BLS63_RS13640 SAMN05216603_107141 WP_090445290.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

25% id,
73% cov

BLS63_RS04960 SAMN05216603_102379 WP_090440611.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

29% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

404740-406956 (frame -2) on NZ_FNCT01000002.1 Pseudomonas benzenivorans strain DSM 8628, whole genome shotgun sequence
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans
Also see hits to annotated proteins above

26% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory