Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)

Found 25 curated entries in PaperBLAST's database that match '2.4.2.2' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query

BLS63_RS00140 SAMN05216603_10128 WP_090438076.1: pyrimidine/purine nucleoside phosphorylase
is similar to:		 PaperBLAST

A0A080UUN2: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Serratia marcescens

 54% id,
97% cov

BLS63_RS03375 SAMN05216603_10260 WP_090439786.1: thymidine phosphorylase family protein
is similar to:		 PaperBLAST

Q5SHF9: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Thermus thermophilus

 32% id,
99% cov

Q72HS4: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Thermus thermophilus

 32% id,
98% cov

A0A0E2M090: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Lacticaseibacillus paracasei

 27% id,
98% cov

More...

BLS63_RS19870 SAMN05216603_113138 WP_090447525.1: thymidine phosphorylase family protein
is similar to:		 PaperBLAST

Q5SHF9: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Thermus thermophilus

 31% id,
100% cov

Q72HS4: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Thermus thermophilus

 32% id,
98% cov

TYMP / P19971: thymidine phosphorylase monomer (EC 2.4.2.3; EC 2.4.2.2) from Homo sapiens

 30% id,
89% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory