Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)

Found 15 curated entries in PaperBLAST's database that match '2.7.1.12' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query

BLS63_RS24290 SAMN05216603_12247 WP_090448378.1: gluconokinase, GntK/IdnK-type
is similar to:
PaperBLAST

Psest_2123: fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri

68% id,
95% cov

Q8NMT0: gluconokinase (EC 2.7.1.12) from Corynebacterium glutamicum

44% id,
93% cov

GntK / b3437: D-gluconate kinase, thermostable (EC 2.7.1.12) from Escherichia coli
gntK: gluconokinase; EC 2.7.1.12 from Escherichia coli
gntK / P46859: D-gluconate kinase, thermostable (EC 2.7.1.12) from Escherichia coli

44% id,
88% cov

More...

cmk BLS63_RS12605 SAMN05216603_106227 WP_090444709.1: (d)CMP kinase
is similar to:
PaperBLAST

IDNK / Q5T6J7: gluconokinase monomer (EC 2.7.1.12) from Homo sapiens
Q5T6J7: gluconokinase (EC 2.7.1.12) from Homo sapiens

24% id,
93% cov

RR42_RS06130: Gluconokinase (EC 2.7.1.12) from Cupriavidus basilensis

35% id,
43% cov

aroK BLS63_RS05305 SAMN05216603_102449 WP_090440803.1: shikimate kinase AroK
is similar to:
PaperBLAST

IDNK / Q5T6J7: gluconokinase monomer (EC 2.7.1.12) from Homo sapiens
Q5T6J7: gluconokinase (EC 2.7.1.12) from Homo sapiens

31% id,
47% cov

RR42_RS06130: Gluconokinase (EC 2.7.1.12) from Cupriavidus basilensis

53% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory