Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)
Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).
These curated entries have 13 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query
BLS63_RS14830 SAMN05216603_10864 WP_090445975.1: homoserine kinase is similar to: | PaperBLAST |
KHSE_PSEAE / P29364: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Pseudomonas aeruginosa | 76% id, 100% cov |
Ga0059261_3253: homoserine kinase (EC 2.7.1.39) from Sphingomonas koreensis | 37% id, 97% cov |
aroK BLS63_RS05305 SAMN05216603_102449 WP_090440803.1: shikimate kinase AroK is similar to: | PaperBLAST |
thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris | 36% id, 81% cov |
BLS63_RS24290 SAMN05216603_12247 WP_090448378.1: gluconokinase, GntK/IdnK-type is similar to: | PaperBLAST |
thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris | 26% id, 86% cov |
ispE BLS63_RS03440 SAMN05216603_10273 WP_090439822.1: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase is similar to: | PaperBLAST |
KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Escherichia coli | 24% id, 41% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
65735-67033 (frame -3) on NZ_FNCT01000022.1 Pseudomonas benzenivorans strain DSM 8628, whole genome shotgun sequence is similar to: | PaperBLAST |
thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris | 27% id, 96% cov |
Lawrence Berkeley National Laboratory