Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)

Found 51 curated entries in PaperBLAST's database that match '3.1.3.3' as complete word(s).

These curated entries have 38 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query

thrH BLS63_RS00600 SAMN05216603_101123 WP_090438338.1: bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH
is similar to:
PaperBLAST

THRH_PSEAE / Q9I2Y2: Phosphoserine phosphatase ThrH; PSP; PSPase; EC 3.1.3.3 from Pseudomonas aeruginosa

92% id,
100% cov

THRH_PSESM / Q883R9: Phosphoserine phosphatase; PSP; PSPase; EC 3.1.3.3 from Pseudomonas syringae

89% id,
86% cov

serB BLS63_RS04850 SAMN05216603_102356 WP_090440547.1: phosphoserine phosphatase SerB
is similar to:
PaperBLAST

SERB_LACLA / Q9CHW3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Lactococcus lactis

47% id,
96% cov

SERB_STRT2 / Q5M3B3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptococcus thermophilus

48% id,
96% cov

SERB_IDILO / Q5QXU4: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Idiomarina loihiensis

46% id,
95% cov

More...

serA BLS63_RS16600 SAMN05216603_109179 WP_090446672.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

54% id,
65% cov

CA265_RS22635: phosphoserine phosphatase (EC 3.1.3.3) from Pedobacter sp.

40% id,
24% cov

BLS63_RS11470 SAMN05216603_105324 WP_090444076.1: HAD family hydrolase
is similar to:
PaperBLAST

PSP_THET2 / Q72H00: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Thermus thermophilus

33% id,
98% cov

cobC BLS63_RS23425 SAMN05216603_12038 WP_090448209.1: alpha-ribazole phosphatase family protein
is similar to:
PaperBLAST

PSPA_HYDTT / D3DFG8: Phosphoserine phosphatase 1; PSP 1; PSPase 1; Metal-independent phosphoserine phosphatase 1; iPSP1; O-phosphoserine phosphohydrolase 1; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFG8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

29% id,
77% cov

PSPB_HYDTT / D3DFP8: Putative phosphoserine phosphatase 2; PSP 2; PSPase 2; Metal-independent phosphoserine phosphatase 2; iPSP2; O-phosphoserine phosphohydrolase 2; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFP8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

23% id,
91% cov

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana

30% id,
66% cov

BLS63_RS16555 SAMN05216603_109170 WP_090446655.1: HAD family phosphatase
is similar to:
PaperBLAST

SERB1_MYCTU / P9WGJ3: Phosphoserine phosphatase SerB1; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Mycobacterium tuberculosis

32% id,
70% cov

SERB_POLSJ / Q12A06: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Polaromonas sp.

27% id,
83% cov

SERB_ALBFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Albidiferax ferrireducens

26% id,
83% cov

More...

BLS63_RS17495 SAMN05216603_110152 WP_090447027.1: SpoIIE family protein phosphatase
is similar to:
PaperBLAST

O07014: phosphoserine phosphatase (EC 3.1.3.3) from Bacillus subtilis

26% id,
67% cov

BLS63_RS17655 SAMN05216603_1116 WP_090447088.1: D-2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

33% id,
41% cov

BLS63_RS21615 SAMN05216603_116103 WP_090447867.1: 2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

30% id,
44% cov

BLS63_RS03155 SAMN05216603_10216 WP_090439658.1: 2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

30% id,
41% cov

pdxB BLS63_RS00065 SAMN05216603_10113 WP_090438030.1: 4-phosphoerythronate dehydrogenase PdxB
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
40% cov

BLS63_RS13835 SAMN05216603_107179 WP_090445399.1: D-2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

28% id,
40% cov

BLS63_RS02745 SAMN05216603_101545 WP_090439324.1: heavy metal translocating P-type ATPase
is similar to:
PaperBLAST

SERB_YEAST / P42941: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Saccharomyces cerevisiae

30% id,
30% cov

BLS63_RS18010 SAMN05216603_11177 WP_090447164.1: TIGR01458 family HAD-type hydrolase
is similar to:
PaperBLAST

PSP_BACSU / P94512: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Bacillus subtilis

34% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

203296-204675 (frame +1) on NZ_FNCT01000009.1 Pseudomonas benzenivorans strain DSM 8628, whole genome shotgun sequence
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis
Also see hits to annotated proteins above

51% id,
70% cov

194754-195458 (frame +3) on NZ_FNCT01000009.1 Pseudomonas benzenivorans strain DSM 8628, whole genome shotgun sequence
is similar to:
PaperBLAST

SERB1_MYCTU / P9WGJ3: Phosphoserine phosphatase SerB1; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Mycobacterium tuberculosis
Also see hits to annotated proteins above

31% id,
77% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory