Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)

Found 16 curated entries in PaperBLAST's database that match '3.5.2.7' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query

hutI BLS63_RS05530 SAMN05216603_102494 WP_090440933.1: imidazolonepropionase
is similar to:
PaperBLAST

Pf6N2E2_3798: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

78% id,
100% cov

hutI / O31200: imidazolonepropionase (EC 3.5.2.7) from Pseudomonas putida

78% id,
100% cov

Pf1N1B4_1579: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

77% id,
100% cov

More...

BLS63_RS16355 SAMN05216603_109130 WP_090446585.1: amidohydrolase
is similar to:
PaperBLAST

SO0095: Imidazolonepropionase (EC 3.5.2.7) from Shewanella oneidensis

25% id,
65% cov

BLS63_RS14005 SAMN05216603_107213 WP_090445495.1: 8-oxoguanine deaminase
is similar to:
PaperBLAST

PGA1_c36350: Imidazolonepropionase (EC 3.5.2.7) from Phaeobacter inhibens

25% id,
44% cov

BLS63_RS12640 SAMN05216603_106234 WP_090444721.1: TRZ/ATZ family hydrolase
is similar to:
PaperBLAST

SO0095: Imidazolonepropionase (EC 3.5.2.7) from Shewanella oneidensis

24% id,
45% cov

hutI / O31200: imidazolonepropionase (EC 3.5.2.7) from Pseudomonas putida

25% id,
42% cov

PfGW456L13_317: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

27% id,
40% cov

BLS63_RS17430 SAMN05216603_110139 WP_176947290.1: amidohydrolase
is similar to:
PaperBLAST

SM_b21166: Imidazolonepropionase (EC 3.5.2.7) from Sinorhizobium meliloti

31% id,
18% cov

guaD BLS63_RS20955 SAMN05216603_11576 WP_090447734.1: guanine deaminase
is similar to:
PaperBLAST

PGA1_c36350: Imidazolonepropionase (EC 3.5.2.7) from Phaeobacter inhibens

35% id,
15% cov

Ac3H11_2550: Imidazolonepropionase (EC 3.5.2.7) from Acidovorax sp.

35% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

164350-166362 (frame -3) on NZ_FNCT01000010.1 Pseudomonas benzenivorans strain DSM 8628, whole genome shotgun sequence
is similar to:
PaperBLAST

SM_b21166: Imidazolonepropionase (EC 3.5.2.7) from Sinorhizobium meliloti
Also see hits to annotated proteins above

25% id,
29% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory