Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)

Found 17 curated entries in PaperBLAST's database that match '3.7.1.3' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query

BLS63_RS08175 SAMN05216603_103505 WP_090442432.1: aminotransferase class V-fold PLP-dependent enzyme
is similar to:
PaperBLAST

sibQ / C0LTN1: kynureninase (EC 3.7.1.3) from Streptosporangium sibiricum

27% id,
85% cov

KYNU_PSEFL / P83788: Kynureninase; L-kynurenine hydrolase; EC 3.7.1.3 from Pseudomonas fluorescens
kyn / P83788: kynureninase subunit (EC 3.7.1.3) from Pseudomonas fluorescens

22% id,
91% cov

RR42_RS15385: Kynureninase (EC 3.7.1.3) from Cupriavidus basilensis

23% id,
83% cov

More...

BLS63_RS18085 SAMN05216603_11193 WP_090447178.1: cysteine desulfurase
is similar to:
PaperBLAST

RR42_RS15385: Kynureninase (EC 3.7.1.3) from Cupriavidus basilensis

22% id,
87% cov

nifS BLS63_RS12040 SAMN05216603_106112 WP_090444410.1: cysteine desulfurase NifS
is similar to:
PaperBLAST

BPHYT_RS16030: Kynureninase (EC 3.7.1.3) from Burkholderia phytofirmans

21% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory