Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query

speA BLS63_RS04420 SAMN05216603_102270 WP_090440327.1: arginine decarboxylase
is similar to:		 PaperBLAST

Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens

 93% id,
100% cov

speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa
Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa

 87% id,
100% cov

Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri

 83% id,
100% cov

More...

BLS63_RS11675 SAMN05216603_10641 WP_090444202.1: Orn/Lys/Arg decarboxylase N-terminal domain-containing protein
is similar to:		 PaperBLAST

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

 51% id,
100% cov

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

 50% id,
100% cov

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

 26% id,
56% cov

More...

BLS63_RS11680 SAMN05216603_10642 WP_090444206.1: Orn/Lys/Arg decarboxylase N-terminal domain-containing protein
is similar to:		 PaperBLAST

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

 43% id,
98% cov

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

 42% id,
98% cov

BLS63_RS01145 SAMN05216603_101232 WP_090439565.1: Orn/Lys/Arg decarboxylase N-terminal domain-containing protein
is similar to:		 PaperBLAST

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

 40% id,
100% cov

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

 40% id,
100% cov

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

 27% id,
54% cov

More...

BLS63_RS22540 SAMN05216603_11863 WP_090448046.1: type III PLP-dependent enzyme
is similar to:		 PaperBLAST

ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens

 26% id,
84% cov

Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni

 28% id,
28% cov

O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori

 26% id,
27% cov

lysA BLS63_RS11450 SAMN05216603_105320 WP_090444062.1: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa
Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa

 28% id,
50% cov

Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens

 27% id,
47% cov

P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.

 26% id,
48% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

210057-210584 (frame +3) on NZ_FNCT01000009.1 Pseudomonas benzenivorans strain DSM 8628, whole genome shotgun sequence
is similar to:		 PaperBLAST

F6KDF0: arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata
Also see hits to annotated proteins above

 26% id,
12% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory