Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)

Found 15 curated entries in PaperBLAST's database that match '4.1.2.55' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query

BLS63_RS18030 SAMN05216603_11181 WP_090447167.1: bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
is similar to:
PaperBLAST

Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
eda / P0A955: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli

48% id,
94% cov

kdgA / P38448: 2-dehydro-3-deoxy-D-gluconate-6-phosphate aldolase (EC 4.1.2.55) from Dickeya dadantii

47% id,
94% cov

TM0066 / Q9WXS1: 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16; EC 4.1.2.55) from Thermotoga maritima

33% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory