Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)

Found 7 curated entries in PaperBLAST's database that match '4.3.1.12' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query

BLS63_RS08570 SAMN05216603_10459 WP_090442744.1: ornithine cyclodeaminase family protein
is similar to:
PaperBLAST

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC 4.3.1.12) from Agrobacterium fabrum

25% id,
67% cov

OCD_AGRT4 / Q59701: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium tumefaciens

24% id,
67% cov

OCD_PSEPK / Q88H32: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Pseudomonas putida
Q88H32: ornithine cyclodeaminase (EC 4.3.1.12) from Pseudomonas putida

25% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory