Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas benzenivorans DSM 8628 (GCF_900100495.1)

Found 1 curated entries in PaperBLAST's database that match '2-deoxy-3-keto-D-ribonate cleavage enzyme' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas benzenivorans DSM 8628, or try another query

BLS63_RS24585 SAMN05216603_12342 WP_090448433.1: 3-keto-5-aminohexanoate cleavage protein
is similar to:
PaperBLAST

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

58% id,
98% cov

BLS63_RS25275 SAMN05216603_12612 WP_090448563.1: 3-keto-5-aminohexanoate cleavage protein
is similar to:
PaperBLAST

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

34% id,
96% cov

BLS63_RS21235 SAMN05216603_11627 WP_090447794.1: 3-keto-5-aminohexanoate cleavage protein
is similar to:
PaperBLAST

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

29% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory