Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiohalomonas denitrificans HLD2 (GCF_900102855.1)

Found 6 curated entries in PaperBLAST's database that match '1.1.1.122' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thiohalomonas denitrificans HLD2, or try another query

BLP65_RS11225 SAMN03097708_02273 WP_092996972.1: SDR family oxidoreductase
is similar to:
PaperBLAST

DHB14_HUMAN / Q9BPX1: L-fucose dehydrogenase; 17-beta-hydroxysteroid dehydrogenase DHRS10; Dehydrogenase/reductase SDR family member 10; Retinal short-chain dehydrogenase/reductase retSDR3; Short chain dehydrogenase/reductase family 47C member 1; EC 1.1.1.122 from Homo sapiens

34% id,
90% cov

BLP65_RS01760 SAMN03097708_00358 WP_092991971.1: SDR family oxidoreductase
is similar to:
PaperBLAST

DHB14_HUMAN / Q9BPX1: L-fucose dehydrogenase; 17-beta-hydroxysteroid dehydrogenase DHRS10; Dehydrogenase/reductase SDR family member 10; Retinal short-chain dehydrogenase/reductase retSDR3; Short chain dehydrogenase/reductase family 47C member 1; EC 1.1.1.122 from Homo sapiens

27% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory