Curated BLAST for Genomes

 

Curated BLAST

Searching in Halopseudomonas litoralis 2SM5 (GCF_900105005.1)

Found 13 curated entries in PaperBLAST's database that match '5.1.1.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Halopseudomonas litoralis 2SM5, or try another query

BLU11_RS07275 SAMN05216198_1483 WP_090272723.1: proline racemase family protein
is similar to:
PaperBLAST

PRAC_ACESD / E3PTZ4: Proline racemase; PR; AsProR; CsPR; EC 5.1.1.4 from Acetoanaerobium sticklandii

38% id,
100% cov

PRAC_CLODI / A8DEZ8: Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile
Q17ZY4: proline racemase (EC 5.1.1.4) from Clostridioides difficile
A8DEZ8: proline racemase (EC 5.1.1.4) from Clostridioides difficile

38% id,
100% cov

Q9L4Q3: proline racemase (EC 5.1.1.4) from Acetoanaerobium sticklandii

37% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory