Curated BLAST for Genomes

 

Curated BLAST

Searching in Mucilaginibacter mallensis MP1X4 (GCF_900105165.1)

Found 15 curated entries in PaperBLAST's database that match '4.1.2.55' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Mucilaginibacter mallensis MP1X4, or try another query

BLU33_RS12875 SAMN05216490_2617 WP_091373342.1: bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
is similar to:
PaperBLAST

TM0066 / Q9WXS1: 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16; EC 4.1.2.55) from Thermotoga maritima

33% id,
94% cov

dapA BLU33_RS02490 SAMN05216490_0510 WP_091368767.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

KDGA_SACSO / O54288: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.55 from Saccharolobus solfataricus
O54288: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14); 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6 phosphogalactonate aldolase (EC 4.1.2.55) from Saccharolobus solfataricus

24% id,
94% cov

KDGA_SACS2 / Q97U28: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.55 from Saccharolobus solfataricus
Q97U28: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6 phosphogalactonate aldolase (EC 4.1.2.55) from Saccharolobus solfataricus

24% id,
89% cov

KDGA_SULAC / Q4JC35: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.55 from Sulfolobus acidocaldarius
Q4JC35: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6 phosphogalactonate aldolase (EC 4.1.2.55) from Sulfolobus acidocaldarius

22% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory