Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfuromusa kysingii DSM 7343 (GCF_900107645.1)

Found 15 curated entries in PaperBLAST's database that match '1.1.99.39' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Desulfuromusa kysingii DSM 7343, or try another query

BLU87_RS05840 SAMN05660420_01171 WP_092345686.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:		 PaperBLAST

D2HDH_ECOLI / P77748: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Escherichia coli
ydiJ / P77748: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Escherichia coli

 61% id,
100% cov

D2HDH_PANAA / A0A0H3KZS3: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Pantoea ananatis

 61% id,
99% cov

D2HDH_PSEPK / Q88EH0: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Pseudomonas putida
ydiJ / Q88EH0: (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas putida
PP_4493: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas putida

 50% id,
100% cov

More...

BLU87_RS13200 SAMN05660420_02643 WP_092349481.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri

 33% id,
100% cov

Q9I6H4: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas aeruginosa

 31% id,
100% cov

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

 31% id,
98% cov

More...

BLU87_RS04945 SAMN05660420_00990 WP_092345295.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

 34% id,
93% cov

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri

 30% id,
100% cov

Q9I6H4: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas aeruginosa

 30% id,
100% cov

More...

BLU87_RS08705 SAMN05660420_01747 WP_092346882.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

Q9I6H4: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas aeruginosa

 31% id,
100% cov

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri

 32% id,
96% cov

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

 29% id,
94% cov

More...

BLU87_RS11910 SAMN05660420_02386 WP_092348737.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:		 PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

 26% id,
61% cov

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri

 25% id,
61% cov

Q9I6H4: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas aeruginosa

 24% id,
61% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory