Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfuromusa kysingii DSM 7343 (GCF_900107645.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfuromusa kysingii DSM 7343, or try another query

thrC BLU87_RS10840 SAMN05660420_02171 WP_092348110.1: threonine synthase
is similar to:
PaperBLAST

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

46% id,
100% cov

THRC_YEAST / P16120: Threonine synthase; TS; EC 4.2.3.1 from Saccharomyces cerevisiae
P16120: threonine synthase (EC 4.2.3.1) from Saccharomyces cerevisiae

46% id,
97% cov

Q2SWH9: threonine synthase (EC 4.2.3.1) from Burkholderia thailandensis

44% id,
99% cov

More...

BLU87_RS00590 SAMN05660420_00118 WP_092343997.1: cysteine synthase family protein
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

27% id,
84% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

114616-115587 (frame -1) on NZ_FNQN01000001.1 Desulfuromusa kysingii strain DSM 7343, whole genome shotgun sequence
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Also see hits to annotated proteins above

27% id,
89% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory