Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfuromusa kysingii DSM 7343 (GCF_900107645.1)

Found 2 curated entries in PaperBLAST's database that match 'acetohydroxy acid synthase%large' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfuromusa kysingii DSM 7343, or try another query

ilvB BLU87_RS05645 SAMN05660420_01131 WP_092345614.1: biosynthetic-type acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

52% id,
97% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

49% id,
94% cov

ilvB BLU87_RS11925 SAMN05660420_02389 WP_092348746.1: biosynthetic-type acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

45% id,
97% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

40% id,
94% cov

BLU87_RS06290 SAMN05660420_01264 WP_092345851.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

28% id,
95% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

28% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

70088-71797 (frame +2) on NZ_FNQN01000003.1 Desulfuromusa kysingii strain DSM 7343, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus
Also see hits to annotated proteins above

52% id,
98% cov

88101-89882 (frame -2) on NZ_FNQN01000007.1 Desulfuromusa kysingii strain DSM 7343, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus
Also see hits to annotated proteins above

44% id,
98% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis
Also see hits to annotated proteins above

40% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory