Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfuromusa kysingii DSM 7343 (GCF_900107645.1)

Found 3 curated entries in PaperBLAST's database that match 'homoaconitase small subunit' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfuromusa kysingii DSM 7343, or try another query

BLU87_RS05675 SAMN05660420_01138 WP_092345624.1: 3-isopropylmalate dehydratase
is similar to:
PaperBLAST

HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

35% id,
89% cov

HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysU / Q9ZND9: homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus

34% id,
78% cov

leuD BLU87_RS11905 SAMN05660420_02385 WP_092348734.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysU / Q9ZND9: homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus

30% id,
86% cov

HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

32% id,
69% cov

acnA BLU87_RS09260 SAMN05660420_01859 WP_217637472.1: aconitate hydratase AcnA
is similar to:
PaperBLAST

HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

27% id,
66% cov

HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysU / Q9ZND9: homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus

38% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory