Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfuromonas acetexigens DSM 1397 (GCF_900111775.1)

Found 21 curated entries in PaperBLAST's database that match '6.3.4.5' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfuromonas acetexigens DSM 1397, or try another query

BQ4888_RS05185 BQ4888_03046 WP_092054523.1: argininosuccinate synthase
is similar to:
PaperBLAST

ASSY_THET8 / P59846: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Thermus thermophilus

62% id,
99% cov

ASSY_THEMA / Q9X2A1: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Thermotoga maritima

51% id,
99% cov

H9BG20: argininosuccinate synthase (EC 6.3.4.5) from Leishmania donovani

51% id,
95% cov

More...

mnmA BQ4888_RS02085 BQ4888_00416 WP_092053006.1: tRNA 2-thiouridine(34) synthase MnmA
is similar to:
PaperBLAST

ASSY_HUMAN / P00966: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Homo sapiens
ASS1 / P00966: Argininosuccinate synthase (EC 6.3.4.5) from Homo sapiens
P00966: argininosuccinate synthase (EC 6.3.4.5) from Homo sapiens

26% id,
25% cov

ASSY_BOVIN / P14568: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Bos taurus

27% id,
24% cov

S4V5K7: argininosuccinate synthase (EC 6.3.4.5) from Protopterus annectens

28% id,
23% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory