Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfuromonas acetexigens DSM 1397 (GCF_900111775.1)

Found 3 curated entries in PaperBLAST's database that match 'ATP-dependent reduction of co(II)balamin' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfuromonas acetexigens DSM 1397, or try another query

BQ4888_RS17190 BQ4888_02566 WP_092058936.1: ASKHA domain-containing protein
is similar to:
PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

31% id,
60% cov

DvMF_1398: ATP-dependent reduction of co(II)balamin (RamA-like) from Desulfovibrio vulgaris

27% id,
65% cov

DVU0908: ATP-dependent reduction of co(II)balamin from Desulfovibrio vulgaris

32% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory