Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiohalospira halophila DSM 15071 HL 3 (GCF_900112605.1)

Found 15 curated entries in PaperBLAST's database that match '1.1.99.39' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Thiohalospira halophila DSM 15071 HL 3, or try another query

BM272_RS06345 SAMN05660831_01276 WP_093427929.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

36% id,
97% cov

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri

32% id,
99% cov

Q9I6H4: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas aeruginosa

30% id,
98% cov

More...

BM272_RS04575 SAMN05660831_00920 WP_093427581.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

32% id,
96% cov

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri

29% id,
98% cov

Q9I6H4: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas aeruginosa

28% id,
98% cov

More...

BM272_RS08845 SAMN05660831_01789 WP_093428428.1: FAD/FMN-binding oxidoreductase
is similar to:
PaperBLAST

D2HDH_HUMAN / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens
D2HGDH / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial (EC 1.1.99.39) from Homo sapiens
Q8N465: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Homo sapiens

24% id,
78% cov

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

28% id,
39% cov

D2HDH_ARATH / O23240: D-2-hydroxyglutarate dehydrogenase, mitochondrial; AtD-2HGDH; EC 1.1.99.39 from Arabidopsis thaliana

26% id,
27% cov

More...

glcE BM272_RS04580 SAMN05660831_00921 WP_093427582.1: glycolate oxidase subunit GlcE
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

27% id,
63% cov

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri

27% id,
38% cov

Q9I6H4: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas aeruginosa

52% id,
5% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory