Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiohalospira halophila DSM 15071 HL 3 (GCF_900112605.1)

Found 15 curated entries in PaperBLAST's database that match '2.7.1.12' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thiohalospira halophila DSM 15071 HL 3, or try another query

aroK BM272_RS09155 SAMN05660831_01852 WP_093428486.1: shikimate kinase AroK
is similar to:
PaperBLAST

RR42_RS06130: Gluconokinase (EC 2.7.1.12) from Cupriavidus basilensis

30% id,
89% cov

IDNK / Q5T6J7: gluconokinase monomer (EC 2.7.1.12) from Homo sapiens
Q5T6J7: gluconokinase (EC 2.7.1.12) from Homo sapiens

35% id,
33% cov

cmk BM272_RS03595 SAMN05660831_00724 WP_093427352.1: (d)CMP kinase
is similar to:
PaperBLAST

GCNK_GLUOX / Q5FQ97: Gluconokinase; Gluconate kinase; EC 2.7.1.12 from Gluconobacter oxydans

52% id,
19% cov

Q10242: gluconokinase (EC 2.7.1.12) from Schizosaccharomyces pombe

36% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory